PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.24446s0003.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 233aa    MW: 26503.2 Da    PI: 7.0218
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.24446s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.1e-0975109137
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskK 37 
                           +r++h+e Er+RR++i s f +Lr +lP+++  ++kK
  Araha.24446s0003.1.p  75 KRAKHKELERQRRQEITSLFKNLRYILPSQY--TKKK 109
                           79***************************63..3333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.41E-672109No hitNo description
SuperFamilySSF474592.04E-772113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.55374130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-775126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-675109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDFPDSSLFI PDFAYENDLD FSTLITPSTH ISFQEPYPCN PVIRCAGTEN DGRQKACETT  60
MTSEIRKGDD EPRNKRAKHK ELERQRRQEI TSLFKNLRYI LPSQYTKKKI KEVSEKRDRI  120
KRSITHPSST GECSIRSVTS STCSCVGDTH IAVVVRPCLI GLEIVVSCCI RHEYCLSNVL  180
QLLAQEQCFN VVSCNSTRLY QRIVHTIVSE VEEGIEVYFS ELQENIIKMG TP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17486KRAKHKELERQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885891e-149AF488589.1 Arabidopsis thaliana clone bHLH055 putative bHLH transcription factor mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_172715.41e-133transcription factor bHLH55
SwissprotQ9LN951e-135BH055_ARATH; Transcription factor bHLH55
TrEMBLV4KZW81e-109V4KZW8_EUTSA; Uncharacterized protein
STRINGAT1G12540.11e-133(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.11e-136bHLH family protein